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Mask repetitive region using BEDtools intersectBed a reads…
http://timeadn.com/?narychniki=cherche-homme-riche-annoeullin&586=8d Mask repetitive region using BEDtools. intersectBed -a reads.bed -b repeat_region.bed -v
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Viewing huge text files between specific lines $…
cytaty singli Viewing huge text files; between specific lines $ sed -n 101,110p /var/log/cron 10 Awesome Examples for Viewing Huge Log Files in Unix
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Subsetting ranged data with its values Example subset…
Subsetting ranged data with its values. Example subset reads according to the width > paired.read.rd RangedData with 997111 rows and 1 value column across 1 space space ranges | strand | 1 chr4 [ 146855, 146898] | + 2 chr4 [1322462, 1322493] | – 3 chr4 [ 135547, 135703] | + 4 chr4 [ 965138,…
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Exchange current window with the next on Ctrl…
Exchange current window with the next on. Ctrl-w x
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The Minus File Again following the lead of…
The Minus File Again following the lead of the standard shell utilities, Perl’s open function treats a file whose name is a single minus, “-“, in a special way. If you open minus for reading, it really means to access the standard input. If you open minus for writing, it really means to access the…
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Finding nearby genes using MySQL query to the…
Finding nearby genes using MySQL query to the public server of USCS. http://genomewiki.ucsc.edu/index.php/Finding_nearby_genes
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Nice tips of unix command tools 123 398…
Nice tips of unix command tools 123 398 17359 317 19 2909 39 -399 -5789 49 33 200 255 33 -378 sort -n file Sort the file by first column. The -n option ensures numeric (as opposed to lexicographic) sort. sort -k 2 -n file Sort the file by second column. The “-k” option here…
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To import a SAM file or other data…
To import a SAM file or other data having “#” as data using read.table, it is necessary to change the “comment.char” option. test.sam
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Import specific columns into R using read table…
Import specific columns into R using read.table test.import
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Ten Simple Rules for Getting Help from Online…
Ten Simple Rules for Getting Help from Online Scientific Communities http://www.ploscompbiol.org/article/info%3Adoi%2F10.1371%2Fjournal.pcbi.1002202