Simple code example to retrieve annotati …


https://media4live.eu/107-dtde68139-chat-seiten-kostenlos-test.html Simple code example to retrieve annotations

Dīpālpur 1 #!/usr/bin/perl -w 2 3 use strict; 4 use Carp; 5 use Bio::SeqIO; 6 7 my $embl_file = shift; 8 my $informat = "embl"; 9 10 my $seq_in = Bio::SeqIO -> new(-file => "<$embl_file", 11 -format => $informat) 12 or croak("File Open Error: $embl_file\n"); 13 14 while (my $seq = $seq_in->next_seq) { 15 16 17 # ID 18 $seq->primary_seq->display_id(); 19 # AC 20 $seq->primary_seq->accession_number(); 21 22 # DE 23 $seq->primary_seq->desc(); 24 25 # CC 26 my $annotation = $seq->annotation(); 27 my @comments = $annotation->get_Annotations('comment'); 28 foreach my $comment (@comments){ 29 print $comment->as_text; 30 } 31 32 33 print "\n"; 34 } 35 36 $seq_in->close() or croak("Close error: $embl_file\n");


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