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matchPWM is now part of Biostrings 2.7.47 in…
once matchPWM() is now part of Biostrings 2.7.47 (in BioC devel, so you need R-2.7). Load Biostrings: library(Biostrings) Suppose ‘pwm’ contains a Position Weight Matrix, let’s say: pwm maxWeights(pwm) # the max weight in each column [1] 17 20 19 20 18 18 20 8 > maxScore(pwm) # the max possible score [1] 140 Let’s match […]
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Save R function to a text file latex…
Santiago TÃanguistenco Save R function to a text file latex.code
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Sumatra is a tool for managing and tracking…
Sumatra is a tool for managing and tracking projects based on numerical simulation and/or analysis, with the aim of supporting reproducible research. It can be thought of as an automated electronic lab notebook for computational projects. It consists of: a command-line interface, smt, for launching simulations/analyses with automatic recording of information about the experiment, annotating […]
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Installing Python without root http stackoverflow com questions…
Installing Python without root. http://stackoverflow.com/questions/622744/unable-to-install-python-without-sudo-access
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Quick and easy submission of R on Sun…
Quick and easy submission of R on Sun Grid Engine Easiest way to submit R jobs Here are two scripts and a symlink I created to make it easy as possible to submit R jobs to your Grid: qsub-R If you normally do something along the lines of: user@exec:~$ nohup nice R CMD BATCH toodles.R […]
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When Mendeley bibliography duplicates instead of refreshing Check…
When Mendeley bibliography duplicates instead of refreshing. Check whether the following option is set in Word 2007: Office button->Word Options->Advanced->General->Confirm file format conversion on open http://feedback.mendeley.com/forums/4941-mendeley-feedback/suggestions/1384943-bug-refresh-bibliography-in-word-creates-duplicat
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Remove the first line in Perl $first line…
Remove the first line in Perl $first_line = ; while () { do_something(); }