Debugging R scripts with command line arguments 1…

Debugging R scripts with command line arguments.

1. Break up the script into two parts: one for reading the arguments, another one for the analysis.
2. Run R with *-args option. It enters the interactive R session.


R  --args -p ../../input/M00724-foxa1.mat -s ../../input/mouse_promoter_seqs_EPD.fasta -c 0.55 -o testing_

3. Source the the file reading arguments.
The file can read the arguments with commandArgs() or by using the getopt package.

4. Source the analysis script.

By microbe

Like to cook for microorganisms and human. Play football, tennis, and baseball.

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